25 Muffins That Are Basically Dessert in Disguise

Muffins are one of those things that hit the sweet spot between treat and everyday bite. They can be packed with fruit, veggies, chocolate, or even a savory twist and somehow still feel like comfort food.

This list brings together some of the best gluten-free muffin recipes, whether you’re after something bright and citrusy or rich and spiced. No matter what you’re craving or what you’ve got in the pantry, there’s something here to bake and enjoy.

Lemon Blueberry Muffins

Bright bursts of lemon and plump blueberries come together in a light, naturally gluten‑free muffin that’s perfect for breakfast or snack time. These use a simple flour blend and fresh citrus zest for a refreshing, home‑style flavor. 

Get the recipe: Lemon Blueberry Muffins

Easy Mochi Muffins

This chewy Japanese‑style muffin features sweet rice flour for a delightfully springy texture you won’t expect, and it’s gluten‑free. These muffins are subtly sweet and slightly sticky, with a unique feel that makes them stand out.

Get the recipe: Easy Mochi Muffins

Double Chocolate Chip Muffins

Rich cocoa and melty chocolate chips create an indulgent, gluten‑free treat made FODMAP‑friendly with a gentle blend of almond and oat flour. Each bite is satisfyingly chocolatey without overdoing the sweetness.

Get the recipe: Double Chocolate Chip Muffins

Pumpkin Muffins

These moist muffins rely on canned pumpkin, warming spices, and a gluten‑free flour mix for a cozy, autumnal flavor on repeat any time of year. They’re softly spiced, lightly sweetened, and totally no‑fuss.

Get the recipe: Pumpkin Muffins

Keto Lemon Blueberry Muffins

Light, fluffy, and perfectly moist, these Keto Lemon Blueberry Muffins bring together sweet bursts of blueberries with bright, tangy lemon flavor. This tasty low-carb treat is a satisfying option that feels both fresh and comforting.

Get the recipe: Keto Lemon Blueberry Muffins

Chocolate Zucchini Oatmeal Muffins

Shredded zucchini sneaks in extra moisture and nutrition alongside rich chocolate chips and hearty oats with no refined sugar and gluten‑free to boot. These feel like your favorite zucchini bread in muffin form. 

Get the recipe: Chocolate Zucchini Oatmeal Muffins

Keto Pumpkin Cream Cheese Muffins

These are cheesecake‑style muffins with a keto twist swirled with tangy cream cheese atop a spiced pumpkin base made with almond flour. They’re creamy, rich, and perfectly portioned. 

Get the recipe: Keto Pumpkin Cream Cheese Muffins

Strawberry Vanilla Muffins

Fluffy vanilla muffins studded with fresh strawberries and made without the top eight allergens. They’re airy, sweet, and great for parties or school lunches. They feel light and summery with a subtle fruit twist.

Get the recipe: Strawberry Vanilla Muffins

Pumpkin Chocolate Chip Muffins

Classic pumpkin spice meets gooey chocolate chips in these easy gluten‑free muffins that use a simple oat‑almond flour blend. Each bite is cozy, sweet, and the perfect pick-me-up.

Get the recipe: Pumpkin Chocolate Chip Muffins

Coconut Flour Muffins

Made with coconut flour and naturally sweetened for a light, grain‑free muffin that’s modestly sweet with a gentle coconut note. The texture is tender and satisfying, with a hint of coconut flavor. 

Get the recipe: Coconut Flour Muffins

Coconut Flour Banana Muffins

Ripe bananas star alongside coconut flour and eggs, making moist breakfast muffins without any refined flour or sugar added. They’re simple, naturally sweet, and filling.

Get the recipe: Coconut Flour Banana Muffins

Vegan Zucchini Muffins

Made without eggs or dairy, these muffins pack shredded zucchini into a lightly spiced, wheat‑free batter for a tender, plant‑based delight. They’re surprisingly fluffy and sneaky with the veggies in a good way. 

Get the recipe: Vegan Zucchini Muffins

Pumpkin Seeds and Blueberries Muffins

These low-carb gems combine nutty pumpkin seeds and tart blueberries in a dense, almond flour base sweetened just right with keto-friendly ingredients. They’re textured, flavorful, and packed with a protein boost. 

Get the recipe: Pumpkin Seeds and Blueberries Muffins

14. Sweet Potato Muffins

Moist sweet potato purée forms the base of these wholesome muffins, flavored with cinnamon and a hint of orange zest, all bound together with oat flour. They’re warm, comforting, and gluten-free. 

Get the recipe: Sweet Potato Muffins

15. Zucchini Blueberry Muffins

This combo balances shredded zucchini with juicy blueberries in a tender, gluten-free batter, lightly sweet and good for sneakily upping your veggie intake. These bake up soft and slightly moist, thanks to the zucchini. 

Get the recipe: Zucchini Blueberry Muffins

Apple Raisin Muffins

These muffins mix tart apples, plump raisins, warming cinnamon, and a zing of ginger into a cozy oat flour base – gluten-free with homey baking flavors. They feel like a hug in muffin form. 

Get the recipe: Apple Raisin Muffins

Apple Cinnamon Muffins

These flourless muffins use applesauce as the main binder, plus ground almonds and oats to create a soft, gently spiced muffin without any grain flour. They’re tender, subtly sweet, and allergy-friendly.

Get the recipe: Apple Cinnamon Muffins

Gluten‑Free Dairy‑Free Pumpkin Muffins

Spiced pumpkin muffins crafted without dairy, using a gluten-free flour blend and coconut milk to stay rich and moist without butter. They’re inclusive and irresistible.

Get the recipe: Pumpkin Muffins

Almond Flour Banana Muffins

Ripe bananas are mashed into an almond flour batter to create heartier, naturally sweet muffins with a delicate almond flavor. They’re gluten-free and soft without refined sugar.

Get the recipe: Almond Flour Banana Muffins

Bakery Style Vanilla Muffins

Fluffy and buttery, these delicious muffins mimic bakery favorites using gluten‑free flours plus a splash of vanilla extract. Airy, simple, and totally classic, they pair well with morning coffee or tea.

Get the recipe: Bakery Style Vanilla Muffins

Pumpkin Muffins

These muffins are moist, warmly spiced, and totally plant-based, made with pumpkin purée, oat flour, and maple syrup for a naturally sweet bite. No eggs or gluten, but still fluffy and satisfying.

Get the recipe: Pumpkin Muffins

Peanut Butter Protein Muffins

With added protein powder and nut butter, these muffins are geared toward post-workout or snack-time fuel without compromising on taste. Naturally sweetened and gluten-free, they pack a punch. 

Get the recipe: Peanut Butter Protein Muffins

Peach Muffins

These peach muffins are soft and fragrant, using fresh or frozen peaches and a splash of vanilla for a summery feel in each bite. Gluten-free and just lightly sweet, perfect for warm days.

Get the recipe: Peach Muffins

Oatmeal Blueberry Muffins

Made with oat flour and bursting with blueberries, these dairy and egg-free muffins are wholesome, soft, and naturally sweet from banana. Easy to prep and great for meal planning. 

Get the recipe: Oatmeal Blueberry Muffins

Greek Yogurt Pumpkin Muffins

These use creamy Greek yogurt and pumpkin purée for moist texture without added sugar, sweetened only with banana and spices. Balanced and great for breakfast on the go.

Get the recipe: Greek Yogurt Pumpkin Muffins